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Gene Therapy and Precision Therapeutics in Rare Disease

Genomic testing can help rare disease patients obtain a diagnosis, which can open doors to targeted treatments and gene therapy. This resource provides an overview of the various approaches and clinical applications.

What is gene therapy?

Gene therapy is a treatment method that involves modifying genes or the expression of genes to treat or prevent disease.

Gene therapy methods

  • Gene replacement is replacing a faulty gene with a healthy copy.
  • Gene modification includes editing a faulty gene to restore function or inactivating a malfunctioning gene.
  • Gene expression can be altered with agents that bind to RNA, such as antisense oligonucleotides (ASO) or interfering RNAs (RNAi).
  • Gene editing tools include CRISPR-Cas9 and other engineered proteins. With CRISPR-Cas9, the targeted gene can be disrupted and inactivated, or modified DNA can be incorporated depending on the desired outcome of editing.

Gene therapy delivery

  • Modified genes in somatic or germline cells can be directly inserted into the patient’s body (in vivo) or into cells that are extracted, modified and reintroduced (ex vivo).
  • Viral vectors such as modified adeno-associated viruses are commonly used to introduce genes into cells. Other methods include other modified viruses, lipid nanoparticles, and electroporation. 

Select conditions with FDA-approved gene therapies

Condition

Gene therapy method

Delivery

Mechanism

Leber congenital amaurosis

Gene replacement

In vivo, retinal cells

Introduces a healthy copy of the gene, which allows for normal regeneration of visual pigments in photoreceptor cells, restoring vision.

Hemophilia A

Gene replacement

In vivo, liver cells

Delivery of a functional gene enables the patient's body to produce clotting factor, reducing prolonged bleeding, easy bruising, and severe joint pain.

Sickle cell anemia

Gene replacement

Ex vivo, modified stem cells

Reactivated production of fetal hemoglobin (HbF), which oxygen and reduces amount of sickle hemoglobin (HbS).

Beta thalassemia

Gene replacement

Ex vivo, stem cells

Red blood cells produce a functional hemoglobin.

Spinal muscular atrophy

ASO

In vivo, intrathecal injection into cerebrospinal fluid

Increases the amount of full-length SMN protein, decreasing the loss of motor neurons.

Familial hypercholesterolemia

RNAi

In vivo, subcutaneous injection

Blocks production of a protein that degrades LDL receptors on liver cells, resulting in more receptors to remove LDL from the bloodstream.

Targeted therapeutics

Targeted therapies involve tailoring medical treatments to address specific genetic mutations (pathogenic variants) in a patient's DNA. By identifying these genetic factors and affectedbiochemical pathways, targeted therapies aim to deliver effective treatments with minimal side effects. Many epilepsies, for example, have established targeted treatments based on the genetic variants and underlying pathophysiology.

Select conditions with FDA-approved therapeutics

Condition

Targeted therapy approach

Mechanism

Hemophilia A

Alhemo (concizumab-mtci), a monoclonal antibody

Binds to and blocks a protein that normally inhibits clotting factors, preventing or reducing bleeding episodes.

Tuberous sclerosis

Everolimus, an mTOR inhibitor

Reduces the hyperactivity of the mTOR pathway in the brain, leading to a decrease in TSC-associated seizure frequency and severity.

Dravet syndrome

Fenfluramine

Serotonin-releasing agent that reduces seizure frequency.

Patient care considerations

When caring for patients receiving gene therapy:

  • Monitor for immune responses, as this is one of the most significant safety concerns. Patients may need immunosuppression before or during treatment.
  • Watch for both short-term side effects (fever, inflammation) and potential long-term effects that are still being studied.
  • Cost and access issues must be discussed with patients - many gene therapies are extremely expensive, sometimes exceeding $1 million per treatment.

Ethical considerations

Be prepared to discuss:

  • The distinction between somatic and germline modifications (the latter being currently prohibited)
  • Informed consent, given the novel nature of the treatment mechanism and potential unknown long-term effects
  • Equitable access to these expensive treatments
  • Privacy concerns regarding genetic information

Learn More

Genomic Testing for Diagnosis (CME|CNE). Practice identifying patients who may benefit from genomic testing and communicating with patients, families, and genetic experts about testing.

Genetic Testing in Pediatric Neurology (CME|CNE). Practice identifying when further value might be added by a molecular diagnosis and choosing the best genetic tests for the clinical context.

References

Bateman-House A. Somatic Gene Therapy: Ethics and Access. Annu Rev Genomics Hum Genet. 2024 Aug;25(1):421-438.

Brooks PJ, Urv TK, Parisi MA. Gene-Targeted Therapies: Overview and Implications. Am J Med Genet C Semin Med Genet. 2023 Mar;193(1):13-18.

Crooke ST, Baker BF, Crooke RM, Liang XH. Antisense Technology: An Overview and Prospectus. Nat Rev Drug Discov. 2021 Jun;20(6):427-453. 

Fermaglich LJ, Miller KL. A comprehensive study of the rare diseases and conditions targeted by orphan drug designations and approvals over the forty years of the Orphan Drug Act. Orphanet J Rare Dis. 2023 Jun 23;18(1):163.

Guerrini R, Balestrini S, Wirrell EC, Walker MC. Monogenic Epilepsies: Disease Mechanisms, Clinical Phenotypes, and Targeted Therapies. Neurology. 2021 Oct 26;97(17):817-831.

Jonker AH, O'Connor D, Cavaller-Bellaubi M, Fetro C, et al. Drug repurposing for rare: progress and opportunities for the rare disease community. Front Med (Lausanne). 2024 Jan 17;11:1352803.

Lechuga L, Franz DN. Everolimus as adjunctive therapy for tuberous sclerosis complex-associated partial-onset seizuresExpert Rev Neurother. 2019;19(10):913-925. 

Papaioannou I, Owen JS, Yáñez-Muñoz RJ. Clinical applications of gene therapy for rare diseases: A review [published correction appears in Int J Exp Pathol. 2024 Jun; 105(3):114]. Int J Exp Pathol. 2023; 104(4):154-176.

Schambach A, Buchholz CJ, Torres-Ruiz R, et al. A new age of precision gene therapy. Lancet. 2024 Feb 10;403(10426):568-582.

Tambuyzer E, Vandendriessche B, Austin CP, et al. Therapies for rare diseases: therapeutic modalities, progress and challenges ahead [published correction appears in Nat Rev Drug Discov. 2020 Apr;19(4):291.]. Nat Rev Drug Discov. 2020; 19(2):93-111.

Zhang Y, Wu ZY. Gene therapy for monogenic disorders: challenges, strategies, and perspectives. J Genet Genomics. 2024 Feb;51(2):133-143.

Disclaimer

All information in this resource is provided for educational purposes only.

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